GeneWalk documentation

• GeneWalk modules reference
  • Process gene lists and map between ID types (genewalk.gene_lists)
  • Networkx MultiGraph assembler (genewalk.nx_mg_assembler)
  • Run DeepWalk on a GeneWalk graph (genewalk.deepwalk)
  • Calculate null distributions (genewalk.null_distributions)
  • Get relevant INDRA Statements (genewalk.get_indra_stmts)
  • Perform statistics and output results (genewalk.perform_statistics)
  • Plotting results (genewalk.plot)
  • Manage resource files (genewalk.resources)

Indices and tables

• Index
• Module Index
• Search Page