GeneWalk modules referenceΒΆ
- Process gene lists and map between ID types (
genewalk.gene_lists
) - Networkx MultiGraph assembler (
genewalk.nx_mg_assembler
) - Run DeepWalk on a GeneWalk graph (
genewalk.deepwalk
) - Calculate null distributions (
genewalk.null_distributions
) - Get relevant INDRA Statements (
genewalk.get_indra_stmts
) - Perform statistics and output results (
genewalk.perform_statistics
) - Plotting results (
genewalk.plot
) - Manage resource files (
genewalk.resources
)