GeneWalk
1.6.1
GeneWalk modules reference
GeneWalk
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D
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A
add_agent_node() (genewalk.nx_mg_assembler.IndraNxMgAssembler method)
add_fplx_edges() (genewalk.nx_mg_assembler.IndraNxMgAssembler method)
add_go_annotations() (genewalk.nx_mg_assembler.NxMgAssembler method)
add_go_ontology() (genewalk.nx_mg_assembler.NxMgAssembler method)
add_indra_edges() (genewalk.nx_mg_assembler.IndraNxMgAssembler method)
add_network_edges() (genewalk.nx_mg_assembler.UserNxMgAssembler method)
add_pc_edges() (genewalk.nx_mg_assembler.PcNxMgAssembler method)
D
DeepWalk (class in genewalk.deepwalk)
download_statements() (in module genewalk.get_indra_stmts)
dump_pickle() (in module genewalk.get_indra_stmts)
F
filter_to_genes() (in module genewalk.get_indra_stmts)
G
generate_output() (genewalk.perform_statistics.GeneWalk method)
GeneWalk (class in genewalk.perform_statistics)
genewalk.deepwalk (module)
genewalk.gene_lists (module)
genewalk.get_indra_stmts (module)
genewalk.null_distributions (module)
genewalk.nx_mg_assembler (module)
genewalk.perform_statistics (module)
genewalk.resources (module)
get_famplex_links() (in module genewalk.get_indra_stmts)
get_famplex_terms() (in module genewalk.get_indra_stmts)
get_gene_attribs() (genewalk.perform_statistics.GeneWalk method)
get_go_attribs() (genewalk.perform_statistics.GeneWalk method)
get_null_distributions() (in module genewalk.null_distributions)
get_rand_graph() (in module genewalk.null_distributions)
get_walks() (genewalk.deepwalk.DeepWalk method)
global_fdr() (genewalk.perform_statistics.GeneWalk method)
graph (genewalk.nx_mg_assembler.IndraNxMgAssembler attribute)
(genewalk.nx_mg_assembler.NxMgAssembler attribute)
(genewalk.nx_mg_assembler.PcNxMgAssembler attribute)
(genewalk.nx_mg_assembler.UserNxMgAssembler attribute)
I
IndraNxMgAssembler (class in genewalk.nx_mg_assembler)
L
load_genes() (in module genewalk.get_indra_stmts)
load_indra_df() (in module genewalk.get_indra_stmts)
load_mouse_genes() (in module genewalk.get_indra_stmts)
load_network() (in module genewalk.nx_mg_assembler)
M
map_ensembl_ids() (in module genewalk.gene_lists)
map_entrez_human() (in module genewalk.gene_lists)
map_entrez_mouse() (in module genewalk.gene_lists)
map_hgnc_ids() (in module genewalk.gene_lists)
map_hgnc_symbols() (in module genewalk.gene_lists)
map_mgi_ids() (in module genewalk.gene_lists)
map_rgd_ids() (in module genewalk.gene_lists)
N
node2edges() (genewalk.nx_mg_assembler.NxMgAssembler method)
node2stmts() (genewalk.nx_mg_assembler.IndraNxMgAssembler method)
NxMgAssembler (class in genewalk.nx_mg_assembler)
P
PcNxMgAssembler (class in genewalk.nx_mg_assembler)
psim() (genewalk.perform_statistics.GeneWalk method)
R
read_gene_list() (in module genewalk.gene_lists)
ResourceManager (class in genewalk.resources)
run_single_walk() (in module genewalk.deepwalk)
run_walks() (in module genewalk.deepwalk)
run_walks_for_node() (in module genewalk.deepwalk)
S
save_graph() (genewalk.nx_mg_assembler.NxMgAssembler method)
U
UserNxMgAssembler (class in genewalk.nx_mg_assembler)
W
walks (genewalk.deepwalk.DeepWalk attribute)
word2vec() (genewalk.deepwalk.DeepWalk method)
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